PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0276s0160.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GeBP

Protein Properties

Length: 329aa MW: 36970.4 Da PI: 4.3392

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0276s0160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.2	2.2e-37	148	245	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 lfqrlw++eDei lLqG++d+++++g+ + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgk++ f+++hdq SapurV1A.0276s0160.1.p 148 LFQRLWTDEDEIELLQGFLDYTTTKGTvnNHHNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLSKINSGKDFCFKSSHDQ 234 79***********************977888************************************************** PP DUF573 87 kifelskkiWg 97 +fe+s+kiW SapurV1A.0276s0160.1.p 235 ATFEISRKIWS 245 ********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-34	149	245	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MRKFNAQGFN FQPLLTLSLG PMAAEQDDTV FDQDLEVDDE DEDDQSSQSQ NDDLEDDLEI 60 ENDDNLPEND DVLSEELLED DDTSTSAAVP TAIPTVTIAS IPAFATTITA VASDSTPDAS 120 KRQRVPPETT TIPSQDSKKP QFDDTRRLFQ RLWTDEDEIE LLQGFLDYTT TKGTVNNHHN 180 DTALFYDQIK SKLQLDFNKN QLVEKLRRLK KKYRNVLSKI NSGKDFCFKS SHDQATFEIS 240 RKIWSSTGKI AGFSNEDGHN LDDDDGGNPN PNLNNHTVMM DGDVAVKIED QKSTPRSRKR 300 SRSRSAVGVR TEEKRNLPCT GRYQVVDI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	303	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0276s0160.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006387323.2	1e-159	probable transcription factor At3g04930
Swissprot	F4K5T4	2e-60	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A2K2C3X3	1e-158	A0A2K2C3X3_POPTR; Uncharacterized protein
STRING	POPTR_1258s00200.1	1e-155	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-59	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	SapurV1A.0276s0160.1.p

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]