PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0278s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23652.9 Da    PI: 7.997
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0278s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-271059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            rie+ks rqv fskR+ g+lKKA+ELSvLCd+e aviifsstgkl+e++s
  SapurV1A.0278s0350.1.p 10 RIEDKSSRQVCFSKRKRGLLKKAKELSVLCDVEMAVIIFSSTGKLFEFCS 59
                            9***********************************************96 PP
2K-box44.75.9e-161071753199
                   K-box  31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             Lq  qR + G+++e+L++++L+qLe++L++ l   R +K+e ++++++ l +ke++l +en+ +++++ 
  SapurV1A.0278s0350.1.p 107 LQMVQRYFEGKNMEQLNINQLNQLERELDSLLVYTRGRKTEAMMKSVSALHQKEQDLANENNLIEREIS 175
                             9999**********************************************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.805161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-29390IPR002100Transcription factor, MADS-box
CDDcd002652.46E-37378No hitNo description
PRINTSPR004041.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.77390180IPR002487Transcription factor, K-box
PfamPF014861.1E-11107174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVRGKVQLQR IEDKSSRQVC FSKRKRGLLK KAKELSVLCD VEMAVIIFSS TGKLFEFCSG  60
NSLRNILERY DTHKTRSQEI AICNNVDKTK NHHAEYMGPS YVDDNPLQMV QRYFEGKNME  120
QLNINQLNQL ERELDSLLVY TRGRKTEAMM KSVSALHQKE QDLANENNLI EREISAIINS  180
GNLASQHGLL AEDPGSAHPS PLDLFHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18177180MEF2C
5f28_B2e-18177180MEF2C
5f28_C2e-18177180MEF2C
5f28_D2e-18177180MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0278s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1473511e-87EF147351.1 Populus trichocarpa clone WS0122_N23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000975.11e-140PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
TrEMBLA0A3N7ED901e-137A0A3N7ED90_POPTR; Uncharacterized protein
STRINGEOY028376e-58(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2313022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-40AGAMOUS-like 8