PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0280s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 288aa    MW: 31668.9 Da    PI: 6.6029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0280s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023112134123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C + F ++  L  H++ H
  SapurV1A.0280s0150.1.p 112 FSCNYCQRKFYSSQALGGHQNAH 134
                             89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-6108139No hitNo description
PROSITE profilePS5015711.427112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEPPARSEAC LSETSSMISV SNAPLCLNPP VIMESQKEGR QLEEDQEEEE EEEHHDGGDT  60
SYDLVLDLSL SSKDSNQDSS KRRASLVDSF DTDPTSKSMD TPQGNETEPR VFSCNYCQRK  120
FYSSQALGGH QNAHKRERTL SKRGQRISAA SFALLQPNYS QQNRYTSMAS LPLHGSFNRS  180
LGIQVHSMIH KPFSTSSSSS IYGKNGGSRK PIDQQPAIGR LASDKFQMAT NINGSSSSNG  240
VARFEITRKF SPASTEGIGG FWWDGSGVNH LKTKHDDLQK LDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0280s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297800.21e-164zinc finger protein 1
TrEMBLB9GMC41e-163B9GMC4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s14780.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-39zinc-finger protein 1