PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0281s0190.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 219aa MW: 24197.2 Da PI: 4.5042

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0281s0190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.9	4.1e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r da+ ++ yeA ar+rdP+yG+v+ i++lqqq SapurV1A.0281s0190.1.p 7 SCGACKFLRRKCTTECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAQIFALQQQ 93 6**********************978******************************************************* PP DUF260 87 leqlkaelallkee 100 +++l++e+++l+++ SapurV1A.0281s0190.1.p 94 VASLQEEIEVLESQ 107 ******999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.253	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCTT ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN 60 RGDAAITISY EALARMRDPI YGCVAQIFAL QQQVASLQEE IEVLESQMAS LTVGVAGFES 120 SQTISNPDCE MLFSFQQDAM DTQYYQNPES AQPNHSGYTA GNQTFDGQMN APLPPLYGWE 180 DQNIFCNSHP RPLERLLEEV DKEIFTYCSW PDSGNIII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	3	117	7	120	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	3	117	7	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0281s0190.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316271.2	1e-155	LOB domain-containing protein 29
Swissprot	Q9LHS8	6e-57	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	B9HT79	1e-153	B9HT79_POPTR; Uncharacterized protein
STRING	POPTR_0010s20800.1	1e-154	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	9e-48	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	SapurV1A.0281s0190.1.p

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]