PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0282s0240.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21806.2 Da    PI: 10.2466
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0282s0240.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  SapurV1A.0282s0240.3.p  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFSS 59
                            79***********************************************96 PP
2K-box79.39.6e-2782171998
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               + ++e l+++   L k+ie L+ ++R+llG++Le++s+ eL+qLe+qLe+sl++iR++Kn+l++eqie+l+  ek l een++Lr
  SapurV1A.0282s0240.3.p  82 MGKDNMEPLKEDTFTLAKKIEHLEISKRKLLGDGLEPCSIDELNQLENQLERSLTRIRARKNQLFREQIEKLKGEEKILMEENTKLR 168
                             567889999999*************************************************************************** PP

                   K-box  96 kkl 98 
                             +k+
  SapurV1A.0282s0240.3.p 169 EKV 171
                             996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.973161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-31323IPR002100Transcription factor, MADS-box
CDDcd002654.59E-43371No hitNo description
SuperFamilySSF554555.1E-33373IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2683171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.48187186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFST RGKLYEFSSS  60
SMNKTIERYQ KRAKDAGISS KMGKDNMEPL KEDTFTLAKK IEHLEISKRK LLGDGLEPCS  120
IDELNQLENQ LERSLTRIRA RKNQLFREQI EKLKGEEKIL MEENTKLREK VLPSSLFWEV  180
SDPTQNHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-20191189MEF2 CHIMERA
6byy_B3e-20191189MEF2 CHIMERA
6byy_C3e-20191189MEF2 CHIMERA
6byy_D3e-20191189MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0282s0240.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247930.0CU224793.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029143.11e-110PREDICTED: agamous-like MADS-box protein AGL19
RefseqXP_011029144.11e-110PREDICTED: agamous-like MADS-box protein AGL19
RefseqXP_011029145.11e-110PREDICTED: agamous-like MADS-box protein AGL19
SwissprotO827437e-78AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A2K2BW101e-107A0A2K2BW10_POPTR; Uncharacterized protein
STRINGXP_006477351.15e-89(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-80AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]