PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0284s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 300aa    MW: 34191 Da    PI: 6.875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0284s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-51111351129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhP+deelv++yL kkv+  +  l   + evd++++ePwd+p ++  + kewyf+s+rd+kyatg r+nrat+sgyWkatg
  SapurV1A.0284s0040.1.p  11 LPPGFRFHPRDEELVCDYLMKKVSCCDSLL---MIEVDLNRCEPWDIPDTACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATG 94 
                             79**********************998444...889************7666789******************************** PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             kd+++l+ +g+lvg++ktLvfy+grapkg+ktdWvmhe+rle
  SapurV1A.0284s0040.1.p  95 KDRHILR-EGTLVGMRKTLVFYQGRAPKGKKTDWVMHEFRLE 135
                             ******9.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-592160IPR003441NAC domain
PROSITE profilePS5100555.62411159IPR003441NAC domain
PfamPF023658.9E-2712134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSNISFVEAK LPPGFRFHPR DEELVCDYLM KKVSCCDSLL MIEVDLNRCE PWDIPDTACV  60
GGKEWYFYSQ RDRKYATGLR TNRATASGYW KATGKDRHIL REGTLVGMRK TLVFYQGRAP  120
KGKKTDWVMH EFRLEGPLLG RPNFFSEKED WVLCRVFYKN TREVMAKPSI RSCYDDTGSS  180
SLPALMDSYI TFDQTQPNLD EHEQVPCFSI FSQIQPNQSF PYITQMEVPN LPIKSTSPFA  240
QVPINITTPL DSFSCDTKVL KAVLNRISMM ENKGSPSLGE GSSESYLSDV GMPNLWNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52616112167NO APICAL MERISTEM PROTEIN
1ut4_B3e-52616112167NO APICAL MERISTEM PROTEIN
1ut7_A3e-52616112167NO APICAL MERISTEM PROTEIN
1ut7_B3e-52616112167NO APICAL MERISTEM PROTEIN
3swm_A3e-52616115170NAC domain-containing protein 19
3swm_B3e-52616115170NAC domain-containing protein 19
3swm_C3e-52616115170NAC domain-containing protein 19
3swm_D3e-52616115170NAC domain-containing protein 19
3swp_A3e-52616115170NAC domain-containing protein 19
3swp_B3e-52616115170NAC domain-containing protein 19
3swp_C3e-52616115170NAC domain-containing protein 19
3swp_D3e-52616115170NAC domain-containing protein 19
4dul_A3e-52616112167NAC domain-containing protein 19
4dul_B3e-52616112167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0284s0040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5342400.0JX534240.1 Populus tremula x Populus alba NAC1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310688.10.0NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE61e-116NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLB9HH130.0B9HH13_POPTR; Uncharacterized protein
STRINGGLYMA15G40510.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-110NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]