PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0292s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 173aa    MW: 19453.4 Da    PI: 9.013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0292s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000131840123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ F++   L  H++ H
  SapurV1A.0292s0190.1.p 18 YECSFCKRGFTNAQALGGHMNIH 40
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-51144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.79E-71445No hitNo description
SMARTSM003550.0091840IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1981845IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVKEDLSSNT TTTAKRSYEC SFCKRGFTNA QALGGHMNIH RKDRVNRTKG KNLASSSSVS  60
SNANEEIKNP RYMVPNSSTH TNYYPFMEAQ RNYEMYFQPP AGSSPRQPYS NYKHGNHNFL  120
GPRSHSLSVN EELWGKGLSL KIGFSIIQDS EGNSRVSDDD EVDLELRLGH DR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0292s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311667.21e-104transcriptional regulator SUPERMAN
TrEMBLB9HKF91e-103B9HKF9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16410.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.14e-17C2H2 family protein