PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0293s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 321aa    MW: 36067.6 Da    PI: 5.2243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0293s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.2e-27958150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            krien++nrqvtfskRrng++KKA+EL +LCd+++a+i+fs++g+l  +s
  SapurV1A.0293s0130.1.p  9 KRIENNTNRQVTFSKRRNGLIKKAYELAILCDIDIALIMFSPSGRLSHFS 58
                            79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.506161IPR002100Transcription factor, MADS-box
CDDcd002659.70E-36275No hitNo description
SuperFamilySSF554551.83E-29279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELAILCD IDIALIMFSP SGRLSHFSGK  60
RRLEDVIARY INMSEHDREI CCGVQNREEI QLEVRNLQHQ LYMAEEQLRL YEPDPLKITS  120
MMELESCEKT LLDTMARLEE RKKCILSSNP AVSTYDPSSM QMFLDTNGGM PDFENDIASW  180
LPENGNNPSS VRVGSDQSSC VPVSNQSSMA LFDALSHATN NLNANHCNNM EGSNMNNSNS  240
EVFPSWYQAF SSLSSTELLS AFMPPTSFSA VKQENIAGPS FTSMLQQPQG ETISNCPQMP  300
SSAVHQCSDY ENQIKQHKIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-17175174Myocyte-specific enhancer factor 2B
1tqe_Q7e-17175174Myocyte-specific enhancer factor 2B
1tqe_R7e-17175174Myocyte-specific enhancer factor 2B
1tqe_S7e-17175174Myocyte-specific enhancer factor 2B
6c9l_A7e-17175174Myocyte-specific enhancer factor 2B
6c9l_B7e-17175174Myocyte-specific enhancer factor 2B
6c9l_C7e-17175174Myocyte-specific enhancer factor 2B
6c9l_D7e-17175174Myocyte-specific enhancer factor 2B
6c9l_E7e-17175174Myocyte-specific enhancer factor 2B
6c9l_F7e-17175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0293s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460612.10.0agamous-like MADS-box protein AGL104 isoform X1
TrEMBLA0A2K1ZRF50.0A0A2K1ZRF5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-56AGAMOUS-like 104