PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0294s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 318aa    MW: 36144.8 Da    PI: 4.9573
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0294s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-172471148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd ll+++++ +G g+W+t ar+ g++Rt+k+c++rw++yl
  SapurV1A.0294s0070.1.p 24 KGPWTIEEDSLLAHYINNHGEGHWNTAARCAGLNRTGKSCRLRWLNYL 71
                            79********************************************97 PP
2Myb_DNA-binding47.25.1e-1577120146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T +E++l+++++ ++G++ W+ Ia++++ gRt++++k++w++
  SapurV1A.0294s0070.1.p  77 RGNITLQEQLLILQLHSRWGNR-WSNIAQHLP-GRTDNEIKNYWRT 120
                             7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2911971IPR017930Myb domain
SuperFamilySSF466894.87E-3021118IPR009057Homeodomain-like
SMARTSM007172.0E-112373IPR001005SANT/Myb domain
PfamPF002498.2E-152471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-212578IPR009057Homeodomain-like
CDDcd001678.49E-92671No hitNo description
PROSITE profilePS5129422.9872126IPR017930Myb domain
SMARTSM007171.2E-1376124IPR001005SANT/Myb domain
PfamPF002497.5E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2279125IPR009057Homeodomain-like
CDDcd001679.25E-797120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDPRVREHGL ASTETEEQDM GTRKGPWTIE EDSLLAHYIN NHGEGHWNTA ARCAGLNRTG  60
KSCRLRWLNY LRPNVRRGNI TLQEQLLILQ LHSRWGNRWS NIAQHLPGRT DNEIKNYWRT  120
RVQKQAKQLK CEVNSKQFRD TMRYAWIPRL IERIQAESES PVDQPIISTP TYHSSQIDIP  180
VAASESGSDL IDPNILPDIS GSCTFSDSLD AQVSSGSDLT CSQNPPSSHY MQNGSCSYPE  240
NDSVPWGWYE HGVDISHYMQ NGSCSYPEND SVPWGWYEHG VDMQGVDEGG YGLIGGGDSM  300
ENFWNEEDIW FLHQQLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-22241264105MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-222412627128MYB TRANSFORMING PROTEIN
1mse_C3e-22241264105C-Myb DNA-Binding Domain
1msf_C3e-22241264105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0294s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320278.21e-176transcription factor MYB108
TrEMBLB9I9F31e-174B9I9F3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11230.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-76myb domain protein 78