PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0296s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 181aa    MW: 20597 Da    PI: 10.242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0296s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-111564654
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                     HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                            + +Er+RR ++++  ++L +l+P+ ++ psk  ls  + Le+A  YIk++
  SapurV1A.0296s0060.1.p 15 KTVERNRRVHMKDLCFKLASLVPHHFSKPSKDmLSQQDQLELAACYIKQM 64
                            679*********************999999999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.53E-4769No hitNo description
PROSITE profilePS5088810.188964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-101383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-101379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-71564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00331570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKKSHCESTS KLDRKTVERN RRVHMKDLCF KLASLVPHHF SKPSKDMLSQ QDQLELAACY  60
IKQMRERVEK LKRVKEQAIT TTRTSRSTGM ASKMIGLRLP VVELRDFGSS IEVVLVSGLN  120
KNFMFYEVIT VLSEEGAEVV SASYSTVGDK VFHTIHAQVR ILRVGVETSR VWERLQELIS  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0296s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322161.11e-116transcription factor bHLH162
TrEMBLB9IEQ21e-114B9IEQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08580.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-34bHLH family protein