PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0304s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 362aa    MW: 40362.3 Da    PI: 6.3464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0304s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14166212354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  SapurV1A.0304s0070.1.p 166 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 212
                             79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-12166212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14167218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-5176215No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-5248308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MCGLKEEDQG ECSQTIHNLQ NYQEQLFLQY HQQMQQHHHQ QQSSDIYGGP RGSGFIFPEV  60
SPILPWPLPP VHNFNPAHFT PNHPVRDHDP FLIPPPVPSS YGGLFNRRAP SLQFAYDGTP  120
NDHLRIISDT LGPVAQPGSA PFGLQAELSK MTAQEIMDAK ALAASKSHSE AERRRRERIN  180
NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTTLIA ETSPVPTEID ELTVDTADED  240
GKFVIKASLC CEDRPDLLPD LIKTLKALRL RTLKAEITTL GGRVKNVLFI TGEEDSSGDS  300
NDHQQQLQEP LQYSVSSIEE ALKAVMEKTG GDDSSSGSVK RQRTNINIIE QQQQQHSIRR  360
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0304s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494810.0AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467196.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-111BH030_ARATH; Transcription factor bHLH30
TrEMBLB9HWM20.0B9HWM2_POPTR; BHLH family protein
STRINGPOPTR_0010s14010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]