PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0304s0070.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 360aa MW: 40077 Da PI: 6.3458

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0304s0070.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.3e-14	166	212	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L SapurV1A.0304s0070.2.p 166 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 212 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-12	166	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	167	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	167	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.78E-5	176	215	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.4E-5	248	308	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MCGLKEEDQG ECSQTIHNLQ NYQEQLFLQY HQQMQQHHHQ QQSSDIYGGP RGSGFIFPEV 60 SPILPWPLPP VHNFNPAHFT PNHPVRDHDP FLIPPPVPSS YGGLFNRRAP SLQFAYDGTP 120 NDHLRIISDT LGPVAQPGSA PFGLQAELSK MTAQEIMDAK ALAASKSHSE AERRRRERIN 180 NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTTLIA ETSPVPTEID ELTVDTADED 240 GKFVIKASLC CEDRPDLLPD LIKTLKALRL RTLKAEITTL GGRVKNVLFI TGEEDSSGDS 300 NDHQQQLQEP LQYSVSSIEE ALKAVMEKTG GDDSSSGSVK RQRTNINIIE QQQQQHRSL*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MCGLKEEDQG ECSQTIHNLQ NYQEQLFLQY HQQMQQHHHQ QQSSDIYGGP RGSGFIFPEV  60
SPILPWPLPP VHNFNPAHFT PNHPVRDHDP FLIPPPVPSS YGGLFNRRAP SLQFAYDGTP  120
NDHLRIISDT LGPVAQPGSA PFGLQAELSK MTAQEIMDAK ALAASKSHSE AERRRRERIN  180
NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTTLIA ETSPVPTEID ELTVDTADED  240
GKFVIKASLC CEDRPDLLPD LIKTLKALRL RTLKAEITTL GGRVKNVLFI TGEEDSSGDS  300
NDHQQQLQEP LQYSVSSIEE ALKAVMEKTG GDDSSSGSVK RQRTNINIIE QQQQQHRSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0304s0070.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149481	0.0	AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024467196.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-111	BH030_ARATH; Transcription factor bHLH30
TrEMBL	B9HWM2	0.0	B9HWM2_POPTR; BHLH family protein
STRING	POPTR_0010s14010.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-88	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0304s0070.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]