PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0307s0120.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ZF-HD

Protein Properties

Length: 134aa MW: 14938.7 Da PI: 8.3639

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0307s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85.3	6.4e-27	20	75	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++++Y eC +NhA+ +Gg+avDGCgEf+p+ g+++t +++ C ACgC RnFHR++ SapurV1A.0307s0120.1.p 20 NTTKYGECWRNHAVLIGGYAVDGCGEFTPK-GDQATREGFICEACGCQRNFHRKQLI 75 5789***********************9.8889*****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.3E-25	22	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-13	23	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-22	23	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.92	24	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MADSDYSRSK PLDEEESRKN TTKYGECWRN HAVLIGGYAV DGCGEFTPKG DQATREGFIC 60 EACGCQRNFH RKQLIKNGVV LLDTHHSPPP YKLYGGARPY IPVSDEESLV YTGSNSEKAR 120 KRPKRCDSVH SKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0307s0120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036340.1	3e-54	PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBL	B9IPC1	2e-52	B9IPC1_POPTR; Uncharacterized protein
STRING	POPTR_0019s03790.1	4e-53	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17111	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-19	homeobox protein 21

Link Out ? help Back to Top
Phytozome	SapurV1A.0307s0120.1.p