PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0308s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 254aa    MW: 28230.5 Da    PI: 7.9962
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0308s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.3e-17187221135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  SapurV1A.0308s0200.1.p 187 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 221
                             *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.106.5E-14180218IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.596181217IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-14181235IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15182245No hitNo description
CDDcd002024.10E-11186233No hitNo description
PROSITE patternPS003440187212IPR000679Zinc finger, GATA-type
PfamPF003204.7E-15187221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDFCRNVTVS KLTAAAASKS PLDDLFSAQN TEVDFSMEWL TVFVEDCLSS TGICLPPPTS  60
DSQKTNTEET PPKPSQQKPQ DQENPSSSKK SVIPGRARSK RRRINGDRSR NPLTSWCNTN  120
QALNLPFSDP PLLQQTHWLA DSELIMPVKD GEVQEKSGVE DDGEDEEGKE SSGRLGSHND  180
QQQPRRCTHC LAQRTPQWRA GPLGPKTLCN ACGVRYKSGR LLPEYRPAKS PTFVSYLHSN  240
SHKKVMEMRM NSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0308s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325826.31e-146GATA transcription factor 2
TrEMBLA0A2K1WNU61e-144A0A2K1WNU6_POPTR; Uncharacterized protein
STRINGPOPTR_0019s04860.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-35GATA transcription factor 4