PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0309s0080.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ZF-HD

Protein Properties

Length: 164aa MW: 17996.5 Da PI: 9.8952

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0309s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85.9	4.3e-27	18	73	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++Y+eC +NhA+ Gg avDGCgEf p+ g+ gt++++ C ACgCHRnFHR+++++ SapurV1A.0309s0080.1.p 18 TTEYRECWRNHAVLAGGSAVDGCGEFSPK-GDRGTKEGFICEACGCHRNFHRKQSVK 73 679***********************9.8889*****************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.3E-25	19	71	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.8E-23	20	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-14	21	71	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.57	21	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MANTDSKSRP VGEESRTTTE YRECWRNHAV LAGGSAVDGC GEFSPKGDRG TKEGFICEAC 60 GCHRNFHRKQ SVKNGVVILD THHSPPPYRL YGVSMWVEKN VSGFNPFSSL PLTSPPPPPP 120 PPPPCYLRAS VSDQESLVYV PPPPPPRKSE KKMKARKRPK RGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0309s0080.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024439335.1	1e-81	zinc-finger homeodomain protein 3-like
TrEMBL	A0A3N7FVC8	3e-80	A0A3N7FVC8_POPTR; Uncharacterized protein
STRING	POPTR_0019s03790.1	3e-54	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17111	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-21	homeobox protein 21

Link Out ? help Back to Top
Phytozome	SapurV1A.0309s0080.1.p