PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0309s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 972aa    MW: 109386 Da    PI: 5.2436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0309s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-14853248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  SapurV1A.0309s0270.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                            78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  SapurV1A.0309s0270.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                             68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001675.12E-121053No hitNo description
PfamPF139214.2E-131070No hitNo description
SuperFamilySSF466898.63E-2133106IPR009057Homeodomain-like
CDDcd116591.22E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.2E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118316.5E-34438609IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 972 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYDPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR RRKRKGIDYN SEIPFEKRPP PGFYDVADED RPVEQPKFPT  240
TIEEIEGKKR MDIEAQLRNQ DAAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEDI AKMGYAIDLL AGSEELMEGS GATRALIANY AQTPRQGMTP LRTPQRTPSG  360
KGDAIMMEAE NLARLRESQT PLLGGENPDL HPSDFSGVTP KKREIQTPNP MLTPLATPGG  420
VGLTPRIGMT PSRDSFGPKN EYQIVIQPPP EDNEEPEVKI EEDMSDRIAR EKAAEEARQQ  480
ALLRKRSKVL QRELPRPPTA SLELIRDSLL RADGDKSSFV PPTLIEQADE MIRKELLALL  540
DHDNAKYPLE EKPSKEKKKG SKHPSNRFAA SIPVIEDFEE DELKQVDNLI KEEAQYIRVA  600
MGHEDESLDE FIEAHKTCIN DLMYFPTRNA YGLSSVAGNM EKLTALQNEF EIVKTRLEAE  660
REKALRLEKK VNVITQGYQI RAERQLLPPI ELTLKQMDTS GTELECFQAL QRQEQLAASH  720
RINGLWEEVQ KQKELEQTLQ RRYGDLVAEL ERIQQLMINH RALAIQQEEI AAKNRAFELA  780
QAAAKQAAIL NSEPSEPMPL DELGSSLPVG SSDEKVSDQQ MDVDSEVYSV WATDTSLTNN  840
VPSDEKQTTL VHSSGHESSC TCPSGSDINN QHGVPLPTGD SINRGDIRSK VDVAVEKKVN  900
DDSVDVDAGD VMITKVMKDS SAAIEGESIQ ERVGFAHADV MQVSSGRDDK VNQMKDEGKL  960
PVMIVDLTNS E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027543799Cell division cycle 5-like protein
5xjc_L0.027543799Cell division cycle 5-like protein
5yzg_L0.027543799Cell division cycle 5-like protein
5z56_L0.027543799Cell division cycle 5-like protein
5z57_L0.027543799Cell division cycle 5-like protein
5z58_L0.027543799Cell division cycle 5-like protein
6ff4_L0.027543799Cell division cycle 5-like protein
6ff7_L0.027543799Cell division cycle 5-like protein
6icz_L0.027543799Cell division cycle 5-like protein
6id0_L0.027543799Cell division cycle 5-like protein
6id1_L0.027543799Cell division cycle 5-like protein
6qdv_O0.027543799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDNRHRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0309s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038518.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLB9I5N30.0B9I5N3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s04340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]