PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0310s0130.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 417aa    MW: 46411 Da    PI: 4.6301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0310s0130.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-11236288154
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 
                             +++ hn+ E+ RR ++N ++  L +llP+ +   +skK  s   i  ++ eYI +L
  SapurV1A.0310s0130.5.p 236 KKQQHNAKEKVRRMNLNASYLALASLLPNsQ---RSKKkWSAPGIIDEVLEYIPEL 288
                             6899*************************44...66666**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.23E-8233293No hitNo description
SuperFamilySSF474594.45E-12234301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-11235293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.919235288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-8236288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-5241294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MYLQGSGSAV LPFENHETCS GNSSLGNFNH HVINSSLTKA TIQNIVNYHT DCGSCTIPLE  60
VSDDPCSAIP ESSTLLQVSD HVFSGELDPR ILVEEECFPE LAMCRNSTEE FAELFDKTIS  120
ELDPVLLLFE QENPGVLSRS EINEDGGFMD GGRNAMINCQ KETSLSCPLE SSDKLEPIMQ  180
DSRKPDTFPE QENQLSVSSS KSGKRVRKGE MNQYRFNLQM EKMESQPHME GGSTSKKQQH  240
NAKEKVRRMN LNASYLALAS LLPNSQRSKK KWSAPGIIDE VLEYIPELES EIEELTLMKS  300
TELSKIEGRQ PHQQDLSAER QAPTISIHEV GQGEVIVQIC SQRRDKEDAA LSNLFQNLEE  360
QSISIASASS INVCEESTVC HHLHIKMDGN PLGVDYQATL RKKVICWLNE STPFQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0310s0130.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581095.19e-77transcription factor bHLH160
TrEMBLB9SU791e-63B9SU79_RICCO; Uncharacterized protein
STRINGXP_002529548.12e-64(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.18e-13bHLH family protein