PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0315s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 184aa    MW: 21472.5 Da    PI: 10.2476
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0315s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-1162177298
                             EEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHH CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keF 68 
                             +k+++psd ++++rl +p + +e+h                   ++++++ ++++ d  +g   ++ ++ + +s++y++ +GW k+F
  SapurV1A.0315s0050.1.p  62 KKKMKPSDLGNLCRLLVPSDLVEKHilpflntaqanqvagvvsRQETNRGLKVRVWDvNTGSMHRLVFKRWSTSRSYIFNDGWtKDF 148
                             699*************************998886666655554333345555555554444444444455*************557* PP

                             HHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                      B3  69 vkangLkegDfvvFkldgr.sefelvvkvfr 98 
                             vk  +L egD + ++ d++  +f  +++v++
  SapurV1A.0315s0050.1.p 149 VKRRNLAEGDEIGIYWDKDqCRF--TFSVLS 177
                             ***************98876666..666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1957175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-1858176IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-1659177No hitNo description
SMARTSM010192.2E-561179IPR003340B3 DNA binding domain
PfamPF023621.6E-863177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEKQGWNQSR NKESEEEMER SRVAFNLRRM RTSYTMGDLL EERSRGVSTE LSLSHYDPFM  60
IKKKMKPSDL GNLCRLLVPS DLVEKHILPF LNTAQANQVA GVVSRQETNR GLKVRVWDVN  120
TGSMHRLVFK RWSTSRSYIF NDGWTKDFVK RRNLAEGDEI GIYWDKDQCR FTFSVLSRAC  180
LVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0315s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035168.13e-99PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLB9H2Z83e-97B9H2Z8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09870.15e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.17e-29B3 family protein