PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0320s0130.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 354aa MW: 36829.7 Da PI: 10.7616

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0320s0130.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5e-07	45	89	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ a +++G g+W+ I + +Rt+ q+ rw SapurV1A.0320s0130.4.p 45 RKPWSEAEDMELISAMQKFGEGNWANIVKGNFkGHRTASQLSQRW 89 789***********************9876555699999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.332	40	97	IPR017930	Myb domain
SuperFamily	SSF46689	4.31E-12	41	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-12	41	93	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-7	44	95	IPR001005	SANT/Myb domain
CDD	cd11660	6.55E-13	46	94	No hit	No description
Pfam	PF13921	1.3E-6	48	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQGMNITVPV SIQKLSLPAA SFGGGADVID ANGSGSGTFP PRRKRKPWSE AEDMELISAM 60 QKFGEGNWAN IVKGNFKGHR TASQLSQRWA IIRKQRGNSN AGTISSGSQL SEAQRAACHA 120 VKMALDSHPA AKSSVAYCSG GIASNKSPNN CMLPAITMEA SLIQHQSQQH PMMSTSSSTW 180 PLRSTEKSQV MLTKTSAKSI SSSDPVRAAA VAAGASIATQ SDAALMLKAA HAKNAVHIMP 240 TGNSSIKSSM DGGVSTQPEG TPNIRLISCG MATAPAASHP AASGPFLGLA KATSPSQVKA 300 SSSIAQHTQS VTSWSTLSEQ TTNAEIPPKQ NIVTFKEIKV FWVARSGKQA SSK*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQGMNITVPV SIQKLSLPAA SFGGGADVID ANGSGSGTFP PRRKRKPWSE AEDMELISAM  60
QKFGEGNWAN IVKGNFKGHR TASQLSQRWA IIRKQRGNSN AGTISSGSQL SEAQRAACHA  120
VKMALDSHPA AKSSVAYCSG GIASNKSPNN CMLPAITMEA SLIQHQSQQH PMMSTSSSTW  180
PLRSTEKSQV MLTKTSAKSI SSSDPVRAAA VAAGASIATQ SDAALMLKAA HAKNAVHIMP  240
TGNSSIKSSM DGGVSTQPEG TPNIRLISCG MATAPAASHP AASGPFLGLA KATSPSQVKA  300
SSSIAQHTQS VTSWSTLSEQ TTNAEIPPKQ NIVTFKEIKV FWVARSGKQA SSK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	46	PRRKRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0320s0130.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302346.1	1e-139	mucin-5AC isoform X1
TrEMBL	B9GN48	1e-137	B9GN48_POPTR; Uncharacterized protein
STRING	POPTR_0002s10670.1	1e-138	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.2	1e-29	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0320s0130.4.p