PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0321s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 192aa    MW: 21936.7 Da    PI: 7.0694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0321s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.12.2e-4281363127
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkat 86 
                             +G+ FhPtde lv++yL+ k+ g + +  ++i+ev+++++ePw+Lp  + +   ++ ++yfFs+r+ kya+++r+nr+t+ g+Wk t
  SapurV1A.0321s0350.1.p   8 VGYGFHPTDEVLVNHYLRLKMLGGHEQDVSIIEEVNVCDYEPWELPGLLGNqdpKDPKCYFFSPRSYKYANSDRANRKTEGGFWKLT 94 
                             79******************99999777799***************6333312255699**************************** PP

                     NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                             gkd+ v++k ++e++ +kktLvfykg+ ++g++t+W+mhey+
  SapurV1A.0321s0350.1.p  95 GKDRIVKAKaTKEHIATKKTLVFYKGSVSNGVRTNWIMHEYH 136
                             ******99977888***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.6416155IPR003441NAC domain
SuperFamilySSF1019414.58E-477154IPR003441NAC domain
PfamPF023652.6E-238136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDFQPSHVGY GFHPTDEVLV NHYLRLKMLG GHEQDVSIIE EVNVCDYEPW ELPGLLGNQD  60
PKDPKCYFFS PRSYKYANSD RANRKTEGGF WKLTGKDRIV KAKATKEHIA TKKTLVFYKG  120
SVSNGVRTNW IMHEYHPTFS FHNQREFVLC KLKKDPEAIM PAYEEGEASS TVTSHRLENH  180
NSDTATSEII P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-30913618139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0321s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440064.12e-98protein NTM1-like 9 isoform X5
TrEMBLA0A3N7G1574e-97A0A3N7G157_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10350.12e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-48NAC transcription factor-like 9