PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0323s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 206aa    MW: 23965.9 Da    PI: 6.7924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0323s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd+ll ++v   G g+W++++r  g+ R++k+c++rw++yl
  SapurV1A.0323s0160.1.p 13 KGPWTPEEDKLLSEYVSVNGEGRWSSVSRFSGLSRSGKSCRLRWLNYL 60
                            79********************************************97 PP
2Myb_DNA-binding51.22.9e-1668110347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  SapurV1A.0323s0160.1.p  68 QITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110
                             569*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.247864IPR017930Myb domain
SuperFamilySSF466891.02E-3010107IPR009057Homeodomain-like
SMARTSM007173.2E-151262IPR001005SANT/Myb domain
PfamPF002491.9E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-221467IPR009057Homeodomain-like
CDDcd001673.08E-101560No hitNo description
SMARTSM007172.4E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129419.28865115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2368113IPR009057Homeodomain-like
PfamPF002494.9E-1469110IPR001005SANT/Myb domain
CDDcd001671.83E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MMGRGVAEQG WRKGPWTPEE DKLLSEYVSV NGEGRWSSVS RFSGLSRSGK SCRLRWLNYL  60
RPGLKRSQIT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKTKDKSSQK  120
QDQRKAQILK PEMQQHQQQL ESGEMKMENT IDDHFKMNEA EMFHNLEDQC WSAMSQDVAS  180
WADFVVEDCY GLWGGLWNLD DHPQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24131147107B-MYB
1h8a_C1e-241311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0323s0160.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454394.11e-121transcription factor MYB59-like
SwissprotQ4JL841e-46MYB59_ARATH; Transcription factor MYB59
SwissprotQ9LX821e-46MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2K2AT891e-119A0A2K2AT89_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11460.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.15e-58myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]