PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0336s0110.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 232aa MW: 25172.5 Da PI: 6.75

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0336s0110.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.6	3.1e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++dC+l+p++ p++q +++ +v+k+FG++ ++++++++pe++r+ +++sl++eA+ r+ +Pv+Gavg++++ SapurV1A.0336s0110.1.p 2 SCNGCRVLRKGCSEDCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISSVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWA 88 6************************************************************************************ PP DUF260 83 lqqqleqlkaelall 97 +++++q+++e++l+ SapurV1A.0336s0110.1.p 89 RNWHVCQAAVETVLR 103 *******998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.911	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSCNGCRVLR KGCSEDCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISSVPESQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWARN WHVCQAAVET VLRGGTLSPM PDFLTDGRSP 120 ASDEASEFEV ACSDIWKLKD PNPAHHSRSR VSPKRKRKEE PVVVNTQHND LDLLLTPSIS 180 QKGLAESCRP GTPSMNSEES VTTNTTCFDC AGYGDHYGNG GGETKLLNLF P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	PKRKRKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0336s0110.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148830	1e-164	EF148830.1 Populus trichocarpa x Populus deltoides clone WS0138_O01 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306497.1	1e-141	LOB domain-containing protein 37
Swissprot	Q9FN11	6e-85	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	B9H6M3	1e-139	B9H6M3_POPTR; Uncharacterized protein
STRING	POPTR_0005s18900.1	1e-140	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-80	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	SapurV1A.0336s0110.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]