PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0339s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 308aa    MW: 34074.4 Da    PI: 9.9517
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0339s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31236293359
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp+++++tYegeH h+
  SapurV1A.0339s0100.1.p 236 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERASDDPSMLVVTYEGEHSHT 293
                             99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.2E-17188232IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.6E-33223293IPR003657WRKY domain
PROSITE profilePS5081130.963229295IPR003657WRKY domain
SuperFamilySSF1182908.24E-27232293IPR003657WRKY domain
SMARTSM007741.4E-37234294IPR003657WRKY domain
PfamPF031063.2E-27236292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVVELMMAYR NSSFLVSKME ENAVEEAASG LESANKLIRL LSQQNQENFH QSSTSTSRST  60
SMDVEMDCKA VPVSKFKKAI SLLRRHRTGH ARFRRAPAYY ATPIQQIPPP VHNQNHHPTV  120
VPKNGEIERK DSATIINFSY SSTGNSFVSS LTGDTDRKQP SSSSSFHITN FSQVSSAGEP  180
PFTTSLSRNC SSENLDSAGK CASSGRCHCS KKRKMRLKRV VRVPSISLKM SDIPPDDYSW  240
RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERASDDPS MLVVTYEGEH SHTISVAETS  300
NLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-212302941073WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0339s0100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774400.0GQ377440.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383530.10.0probable WRKY transcription factor 7 isoform X2
SwissprotO221762e-80WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLU5GIR00.0U5GIR0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.13e-62WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]