PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0340s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 205aa    MW: 23110.5 Da    PI: 10.098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0340s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-0987133454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h+ +Er RR++i  ++  L++l+P +    ++   Ka iL + +++++sL
  SapurV1A.0340s0220.1.p  87 SHSLAERARREKISAKMRLLQSLVPGC----DGITGKAHILDEIIRHVQSL 133
                             8*************************9....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1481148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.08E-681138No hitNo description
PROSITE profilePS5088814.24683133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-1584145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-687133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-689139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVVGTPDYRE EDQVIQAVTP TMGQMRKQSL PTRKVQRESK REKLPKSSVS RKLERVKPTK  60
RQKTVPPAEL TAGYVHVRAR RGEATDSHSL AERARREKIS AKMRLLQSLV PGCDGITGKA  120
HILDEIIRHV QSLKDRVETL EAELVLVNET AINDFKMNYN MEAQAWHELS PLREISDAPT  180
SLLQPQLTKP ATLEGHERLF SSVD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0340s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452218.11e-107transcription factor bHLH63 isoform X1
SwissprotQ69WS31e-30BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A3N7EDC31e-105A0A3N7EDC3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16300.16e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16101510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.36e-33bHLH family protein