PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0344s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 669aa    MW: 77337 Da    PI: 5.6481
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0344s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.3e-2258140290
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                             fYn YAk+ GF +r+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH 
  SapurV1A.0344s0260.1.p  58 FYNCYAKQQGFGIRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMENKRWKIIEVELEHNHL 138
                             9***************99997.66779**************99888.....***********************************8 PP

                    FAR1  89 la 90 
                             ++
  SapurV1A.0344s0260.1.p 139 IT 140
                             75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1958140IPR004330FAR1 DNA binding domain
PfamPF105519.1E-23261347IPR018289MULE transposase domain
PROSITE profilePS509669.087548584IPR007527Zinc finger, SWIM-type
PfamPF044349.0E-5554581IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEEVCLNTES VGNDDADECE IEGDCAMTEY VSETGVIENP LPPSVGMEFE SYEDVYYFYN  60
CYAKQQGFGI RVSNTWYRKS KERYRGKLSC SSAGFKKKSE ANRPRPETRT GCPAMVKFRL  120
MENKRWKIIE VELEHNHLIT PGSGKFYKSH KIIGAGTKRT LQLDGPEEVQ KIKLFRTVIV  180
DAEGNGGVDT DGGQFGNDVL LPSQLKFKEG DAQAVQNFFF RLQLMDPNFF YVVELNEKGY  240
MRNLFWTDAR SRVAYGYFCD VIAIDTMCMA YKFEVPLVTF IGVNHHGQPI LLGCGMLADE  300
TTESYIWLLR AWLTCMLGRP PQAIITDHHK NLQTAVADVF PRASHCFYLS RIIQRIPETL  360
GELFDLEAIK VSLSKVVYYF LRPEEFEAAW DEMTQNHGIR DHKWIQTLYE DRKRWVPAYL  420
KETFLAGMLP LQQNETAASF FEGYLDRHTS LKEFMDNYDQ ALQENHQLES LADMDSRNSS  480
CMLKSRCYFE LQLSKLYTNE IARRFEREVE GMYSCFCTRQ AYVDGQVMTY LVKEQVEVEG  540
SKPETRDFEV MYNASEMDVL CVCGLFNFCG YLCRHALSVL NQHGLEEIPP QYILARWRKD  600
TRRSYVLDHG CRGIDTNNPI HRYDHLYKCI VRVVEEGRKS QDCSKATQQA LADILNKLHL  660
VEDWPCNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0344s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369303.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_024437631.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLU5GWD60.0U5GWD6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s20880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6