PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0348s0040.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 456aa    MW: 52185.7 Da    PI: 4.2479
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0348s0040.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-52171432128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                             ppGfrFhPtdeelv +yLkkk+ +k++el ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++gyWk t
  SapurV1A.0348s0040.4.p  17 PPGFRFHPTDEELVLYYLKKKICKKRIEL-NIIRELDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKVT 102
                             8****************************.99**************96446788999****************************** PP

                     NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             gkd+ v++ ++++vg+kktLvfy grap+g++tdWvmhey+l
  SapurV1A.0348s0040.4.p 103 GKDRIVVC-NSRNVGVKKTLVFYIGRAPSGQRTDWVMHEYTL 143
                             ********.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6012166IPR003441NAC domain
PROSITE profilePS5100554.72316166IPR003441NAC domain
PfamPF023657.3E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MTVTADSCLG ADDKAWPPGF RFHPTDEELV LYYLKKKICK KRIELNIIRE LDVYKWDPEE  60
LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK VTGKDRIVVC NSRNVGVKKT  120
LVFYIGRAPS GQRTDWVMHE YTLYEEELNR CPNVQDYYAL YKVFKKSGPG PKNGEQYGAP  180
FKEEDWADDE YPCVNGMVTP EIPVEQHNEV SLVDNVRVSD QLEPLLDDFE EIIKQIAEEP  240
APNQLQNNDF THLLSQEVVS EPAGELMTSG QHYNKYTSFN FNQSATSTLQ LHEAPEVTSS  300
PNCEEAPQLN EEDFLEIDDL IDPEPSFFST EQPAENLKFD DFDGLSELDE YDDAAMFFHG  360
MGPVDQEAVS CSYMNSYACD VINQASYQLQ PNTITNLVDY HLQPNLVANQ VDYELQPQFF  420
DSEQMNSQLW VHDHQNNALA TSESHHGILF QSTGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-491716618165NO APICAL MERISTEM PROTEIN
1ut4_B5e-491716618165NO APICAL MERISTEM PROTEIN
1ut7_A5e-491716618165NO APICAL MERISTEM PROTEIN
1ut7_B5e-491716618165NO APICAL MERISTEM PROTEIN
4dul_A5e-491716618165NAC domain-containing protein 19
4dul_B5e-491716618165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0348s0040.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044813.10.0PREDICTED: NAC domain-containing protein 69 isoform X1
SwissprotQ9XIC51e-121NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A2K2AJE60.0A0A2K2AJE6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-116NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]