PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0352s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 239aa    MW: 27214.8 Da    PI: 6.3979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0352s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09119159954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++ a++Le+A++Y+k L
  SapurV1A.0352s0020.1.p 119 ARLRRERISEKIRILQRLVPGG-----RKMDTASMLEEAIRYVKFL 159
                             699*****************96.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14115177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-11116164No hitNo description
Gene3DG3DSA:4.10.280.101.5E-12117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6120159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDINQTKFMN HAWNNLDMSM EDQILHHDQL PFNSISWPSC PPQTQIPASI QTPISTFLSD  60
RVCSNTEEEE EDPEEELGAM KEMMYRIAAM QPVEIDPATI RKPKRRNVRI SDDPQSVAAR  120
LRRERISEKI RILQRLVPGG RKMDTASMLE EAIRYVKFLK RQIRLLQPDH HQQQQHQPCS  180
TINGDWQIPY SNKPLDSTTT ASSLLDPRAG GLGYILGGNT GGNPLCFNHE NQSIIRDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0352s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134931e-84AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307019.11e-138transcription factor HEC3
TrEMBLA0A2K2ACA91e-114A0A2K2ACA9_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0005s06220.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-46bHLH family protein