PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0354s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 276aa    MW: 30594.3 Da    PI: 9.352
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0354s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK68.59.5e-221859748
                  RWP-RK  7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
                             e +sk+Fslp+ dAA++Lgvc++vLK+iCR++G++RWP+Rk
  SapurV1A.0354s0080.1.p 18 WEAISKHFSLPLSDAANNLGVCVSVLKKICRENGLDRWPYRK 59
                            689**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.175182IPR003035RWP-RK domain
PfamPF020422.0E-201859IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNIQQQQQQQ IQSKPPSWEA ISKHFSLPLS DAANNLGVCV SVLKKICREN GLDRWPYRKY  60
LAGKSIEDIR RYAAREKLKA LSDLAKAANK SGIQQQNNEN SKPHKLQQQG TKDVPVGRQH  120
ITLTPGLAKG LMGLDEFKYG FPSDGLSTAT NKWWDSSLSG TQRATDRVGI ETDEDDSHQS  180
DEKTDAGTSV MIVDNDTAEN GKMESNEIDP QGTGLLTSVR KRAVEEGREA LTLGVHRTYG  240
ANKLGRKQRA FLLRIFGSSL PKQWIQDSCS NRVEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0354s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485940.0EF148594.1 Populus trichocarpa x Populus deltoides clone WS0134_I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300875.11e-176uncharacterized protein LOC7468732
TrEMBLA9PJK41e-177A9PJK4_9ROSI; Uncharacterized protein
STRINGPOPTR_0002s05980.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1312233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.12e-10Nin-like family protein