PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0354s0280.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 222aa MW: 25274.3 Da PI: 6.1752

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0354s0280.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.2	4.3e-29	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLHe+F eav++LGG+ kAtPk+il++m+vk L ++h+kSHLQ+YR+ SapurV1A.0354s0280.1.p 18 PRLRWTPELHEHFAEAVDRLGGKYKATPKRILQTMSVKELKISHIKSHLQMYRS 71 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-27	15	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-14	16	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-22	18	71	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-7	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDTSQKNGAR RYKKSEHPRL RWTPELHEHF AEAVDRLGGK YKATPKRILQ TMSVKELKIS 60 HIKSHLQMYR SMDSPMKEPL QAERILHYDM GMSSSFSSQR LLQGECLIQL ECQGSDSKCD 120 HRFSDESNGI LQAKEGGGDP EQQDSGTSFA VSKSREEIID RLPAETCELS LSFTPSMACC 180 TTEERELWPL INDQHHREYN STINGQDLQF ESSHINLDLT I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0354s0280.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026215.1	1e-115	PREDICTED: uncharacterized protein LOC105126894 isoform X1
Refseq	XP_011026216.1	1e-115	PREDICTED: uncharacterized protein LOC105126894 isoform X1
TrEMBL	A0A2K2BE09	1e-107	A0A2K2BE09_POPTR; Uncharacterized protein
STRING	POPTR_0002s05770.1	1e-109	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	5e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0354s0280.1.p