PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0355s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 892aa    MW: 98544.4 Da    PI: 6.4739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0355s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22127225196
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  SapurV1A.0355s0030.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 211
                             99*****************************85545444..8********************************************* PP

                             EEEE-SSSEE..EEEE CS
                      B3  81 vFkldgrsefelvvkv 96 
                             +F   ++++ +l++++
  SapurV1A.0355s0030.1.p 212 LFI--WNENNQLLLGI 225
                             **9..67676677766 PP
2Auxin_resp117.11.5e-38253336183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+++YnPras+seF+++v+k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  SapurV1A.0355s0030.1.p 253 AAHAAATNSRFTIFYNPRASPSEFIIPVAKYLKACYyTQVSVGMRFRMLFETEESSVRRYMGTITGISDLDIARWPNSHWRSVK 336
                             79********************************9989*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-47112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-40120241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20126219No hitNo description
PfamPF023621.5E-20127225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041127229IPR003340B3 DNA binding domain
SMARTSM010191.6E-22127229IPR003340B3 DNA binding domain
PfamPF065071.8E-33253336IPR010525Auxin response factor
PfamPF023091.8E-6756847IPR033389AUX/IAA domain
PROSITE profilePS5174520.026762847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MRLSSASFIP QTQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAWIPNYPS LPPQLVCQLH NVTMHADVET DEVYAQLTLQ PLSPQEQKDA YLPADLGTPS  120
KQPTIYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPVQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIKHATR PQTSMPSSVL  240
SSESMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPV AKYLKACYYT QVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDIARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWTPG LPSFHGIKDD NLGMNTSLMW LRGDGDPGIQ SLNLQGMGVA  420
PWMQPKVDTS MLGLQYDVYQ NMDTAVIQEM RALDPSKSSA ASLLQFQQHQ NLPIRKAALM  480
LPHMLQQSPS QQAFLQGVQE NRHQSQTPIQ SHQIHQQLQH QQSLESPELQ QPLLQQQQLA  540
DQQIPNVVSA ISQYVSATQS LTPPLQATSL CQQHSFSDSN GNIVTSPVIS PLQSLLGSFP  600
RDESSHLFNL PRTNPLVTSS GWPSKRAAVE PLISSVAPQW MMSQVKQLGP PQTSTYPSFV  660
SLPPFPGRQC PTEQDGGTDP QSHLLFGVNI EPSSLLLQNG LSSLRGVGSG SDSTIAPFSS  720
SYMSIAGTNF SLNPAMAPSS CIDESGFLQS TENVAQGNPP TRTFVKVYKS GSFGRSLDIT  780
KFSNYNELRS ELACMFGLEG QLEDPLRSGW QLVFVDQEND ALLLGDGPWP EFVNSVWYIK  840
ILSPQEVQQM GKGGLELLNC VPFQRLSNDH ANRQDSQSLS TAVTSVGSLD C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0355s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007615.10.0PREDICTED: auxin response factor 6-like
RefseqXP_011007617.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1L6K4Y20.0A0A1L6K4Y2_POPTO; Auxin response factor
STRINGPOPTR_0011s09450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]