PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0357s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WOX
Protein Properties Length: 378aa    MW: 42315.9 Da    PI: 6.9389
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0357s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.4e-2177136357
                             --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             +R+++t+eql +Leel+++ +r+ps+++++ ++++l    +++ ++V++WFqN++a+e++
  SapurV1A.0357s0040.1.p  77 SRWNPTPEQLGTLEELYRRgTRTPSTDQIQSITAQLrrygRIEGKNVFYWFQNHKARERQ 136
                             7*****************99**************************************97 PP
2Wus_type_Homeobox113.61e-3676138365
       Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                             ++RW+PtpeQ+  Leely++G+rtP++++iq ita+L++yG+ie+kNVfyWFQN+kaRerqk+
  SapurV1A.0357s0040.1.p  76 SSRWNPTPEQLGTLEELYRRGTRTPSTDQIQSITAQLRRYGRIEGKNVFYWFQNHKARERQKR 138
                             79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.8E-574141IPR001356Homeobox domain
PfamPF000461.9E-1877136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-877136IPR009057Homeodomain-like
SuperFamilySSF466895.99E-1277142IPR009057Homeodomain-like
CDDcd000867.80E-678138No hitNo description
PROSITE profilePS5007110.73882137IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MWMVGYNDGG DSFNGRKLKS LVPRPIPSTS AASSPPCLDR GLHSADFLAL NQYQLGLASM  60
ADQSIREFNA QPVVMSSRWN PTPEQLGTLE ELYRRGTRTP STDQIQSITA QLRRYGRIEG  120
KNVFYWFQNH KARERQKRRR QMESDSLDGH QQPGHGSEMF DRKESGASRT SYEDEQTMNW  180
APYTNYSTLS EESVSISKST KAGMAEYCRP DGWIEFDERE LQHRRNLMER NATRETMRFS  240
CPSPTHLSTT ISSGAAAATT RATPCLSTQG AATARTMKPA NLMNIFIAPY RENGDHGAVT  300
DHFNNGVISD GDDRCRDGTW ESQALQLFPL RSGGNGNNLE RINERETDQV SVSAAETLNA  360
NGNFAPCQFF EFLPLKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0357s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9826990.0KF982699.1 Populus tomentosa WOX1a (WOX1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039127.10.0PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A2K1Y9060.0A0A2K1Y906_POPTR; Uncharacterized protein
STRINGPOPTR_0012s04510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-47WUSCHEL related homeobox 1