PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0361s0280.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 227aa MW: 25368.6 Da PI: 10.862

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0361s0280.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.9	2.9e-16	127	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k +++s+v+ +l lp +f+++ ++++ +tl de+ +++v + rk++ l++GWk+F+ a+gL +gD vvF+l++ SapurV1A.0361s0280.1.p 127 FIKSMLQSHVTGGFWLGLPVDFCRRSL--PRKDGVITLIDEDADEYQVIYLARKNG----LSGGWKGFAVAHGLLDGDAVVFQLIKP 207 89*******************9884..234558***********667776....**********************997 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 + f +v ++r SapurV1A.0361s0280.1.p 208 TAF--KVYIIR 216 777..888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.5E-20	120	218	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-24	121	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.77E-26	125	216	No hit	No description
PROSITE profile	PS50863	12.421	127	218	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-14	127	216	IPR003340	B3 DNA binding domain
SMART	SM01019	3.6E-23	127	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVAKKSAYEE SRQKRMEENK KRMEALNLHK LSQALKIPSP AKPSPMKRSK PRVVEKQVVV 60 VRRSSRVANK PAPVLKEVVL DRVVIPRRIS KPRNLSNRVY ATDEARAKAM EKAEKLQSNL 120 GSDHPIFIKS MLQSHVTGGF WLGLPVDFCR RSLPRKDGVI TLIDEDADEY QVIYLARKNG 180 LSGGWKGFAV AHGLLDGDAV VFQLIKPTAF KVYIIRVNGS EQGNSL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0361s0280.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146978	0.0	EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441189.1	1e-138	B3 domain-containing protein At5g42700
Refseq	XP_024441190.1	1e-138	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	2e-77	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2K1XPS3	1e-136	A0A2K1XPS3_POPTR; Uncharacterized protein
STRING	POPTR_0014s03120.1	1e-128	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-72	B3 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0361s0280.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]