PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0362s0300.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 1265aa MW: 144952 Da PI: 6.2306

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0362s0300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	169.3	3e-52	7	334	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 + L+ cAea++ g+l a++lLa ++ las+d+ ++++++a+y +eAL +r+++ + +pp++ + +++e SapurV1A.0362s0300.1.p 7 QRLMGCAEAIEGGNLDVADSLLASIQSLASQDDsKSTRKVAKYCAEALVRRVYG----IRPLCPPRSLP------------FLYE-- 75 579**************************9989***************....32222333333............4555.. PP GRAS 89 PilkfshltaNqaIleave.geervHiiDfdisqGl.QWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173 P+ f + t+ aI +a++ g++r+HiiD++i G+ W +++ L R +g s+ iT v + k++ +e ++ ++ SapurV1A.0362s0300.1.p 76 PFDWFVQTTTEDAIADALNpGNKRLHIIDLSIFPGIsRWTIFIRRLKVRYGGLQSVLITSVTP-----KRSSQEWDRKV------VD 151 9999**********8567*********748*********************.....77788888875......67 PP GRAS 174 vpfefnvlvak.rledl.eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 v++e++ l+ + + + +++Lr k+ +E++aVn+ + l +ll++++++e+ vL+ vk+l+++++v++eqea++ns+++ +r+ SapurV1A.0362s0300.1.p 152 VDLEWRQLIYNsPADIVkCFSKLRRKRkDEMVAVNWGFILGKLLAQDGAIEQ----VLSKVKDLEADIMVISEQEANLNSPDLSNRV 234 8889888866635555534689999988*******************9....*************************** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 +++ yysa+f+ le++ ++r + +++r+i nvvaceg +r+er e++ +W++rl++aGF p+pl+ + SapurV1A.0362s0300.1.p 235 GQSIVYYSAVFELLEQE-----DDRYRSWELYFRRQIGNVVACEGIDRVERIESFDQWQHRLSKAGFCPIPLRAAPFFN-------- 308 ***********99.....6666666778*************************************98766544........ PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +++g + l W++ L vS+W+ SapurV1A.0362s0300.1.p 309 ----SEIRQKDGHMELRWHGFLLAIVSVWK 334 ....34667788888999999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	28.498	1	326	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-49	7	334	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	10.12	705	761	IPR003656	Zinc finger, BED-type
SMART	SM00614	7.8E-11	705	756	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	2.86E-7	708	761	No hit	No description
SuperFamily	SSF53098	3.03E-50	832	1242	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	8.6E-20	1070	1164	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	1.9E-13	1195	1248	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1265 aa Download sequence Send to blast
MAFLQFQRLM GCAEAIEGGN LDVADSLLAS IQSLASQDDS KSTRKVAKYC AEALVRRVYG 60 IRPLCPPRSL PFLYEPFDWF VQTTTEDAIA DALNPGNKRL HIIDLSIFPG ISRWTIFIRR 120 LKVRYGGLQS VLITSVTPKR SSQEWDRKVV DVDLEWRQLI YNSPADIVKC FSKLRRKRKD 180 EMVAVNWGFI LGKLLAQDGA IEQVLSKVKD LEADIMVISE QEANLNSPDL SNRVGQSIVY 240 YSAVFELLEQ EDDRYRSWEL YFRRQIGNVV ACEGIDRVER IESFDQWQHR LSKAGFCPIP 300 LRAAPFFNSE IRQKDGHMEL RWHGFLLAIV SVWKFTDPPQ SSSDLCVMQD IVDDREEMAN 360 SSESEDDEEN DPCIMLDRNL CYTQCSAMNR IAASAKLFDI LEYLCHLYKL PAAVTWISNN 420 RGGNTNSNEK RILCIDYSAC CTLTLSMDEY INGYARHHLE EGQGVAGKAL QSNFHIQHDI 480 YEPDPAHFND FDNASNWQNR SLRASFAIRL TSTHSCKDDY VLEFFLPYGM EDTSERELLI 540 SKVLRTLQEI CFKSWKVWVT EQNEASGFGV RLDDERMSNI PHEVVLGVNE FMTFNSTSNQ 600 AGETYEPLEQ DVEEQFAIDA PALNIENAML TVNGGLQSTN KRRKKQSAIV APAPNDENAS 660 LIGDSGLQGT NKRKKKQSAM TAPALNDENA SLIVDGGHQN TNKRQRKSTV WENFDKPCRE 720 NGQLWATCKH CKKKYRAESY RGTTNLHKHL KKCLPRRQDE AEQQPLIFET GGSSTSIIQR 780 NSVINQERSR LDIEKMIINH GYPLDMVQHE FELHSKDDVE ANVLAICRQE KEKLIKYFDN 840 LSCLLSLTLG LWSSNDRMMT YCCLTVHFID DGWQLKKKIL AFKNLRYSYD TGTVHEFIKS 900 VLAEWRINKN VRFILLDITP PKEHMIGELR SKVSDKAQLV HGHLFCVSSY AQILSLLIQD 960 GFSEIRSLLY KIRECIEYVN GSSLGRQWFQ EAINNGSLQG KEMPFQDVPA RWDTTFLMLE 1020 SSLEFREAFN HLEQLDRDFK VNLSTEEWNK ATSICECLKE LHKSTSNFPK TLESYFLSVR 1080 DVYKNLLKWK QSEHVYVRST ANKMKGKFDE YWGEASLALG ISVVLNPSFK LKLVKYGYQQ 1140 IYGSEYSLHI SKFLHNVTVV YHKYDQGPSS SAMVDESLCP SSDISFEEWH SQQNELDQYL 1200 EQPLEKLDKD GNVLAWWQEN AQKFPVLGKM ARDFLAIPVS TVISKSSEVM KMASVHDGVH 1260 HEIA*

Sequence ? help Back to Top

Protein Sequence Length: 1265 aa Download sequence Send to blast

MAFLQFQRLM GCAEAIEGGN LDVADSLLAS IQSLASQDDS KSTRKVAKYC AEALVRRVYG  60
IRPLCPPRSL PFLYEPFDWF VQTTTEDAIA DALNPGNKRL HIIDLSIFPG ISRWTIFIRR  120
LKVRYGGLQS VLITSVTPKR SSQEWDRKVV DVDLEWRQLI YNSPADIVKC FSKLRRKRKD  180
EMVAVNWGFI LGKLLAQDGA IEQVLSKVKD LEADIMVISE QEANLNSPDL SNRVGQSIVY  240
YSAVFELLEQ EDDRYRSWEL YFRRQIGNVV ACEGIDRVER IESFDQWQHR LSKAGFCPIP  300
LRAAPFFNSE IRQKDGHMEL RWHGFLLAIV SVWKFTDPPQ SSSDLCVMQD IVDDREEMAN  360
SSESEDDEEN DPCIMLDRNL CYTQCSAMNR IAASAKLFDI LEYLCHLYKL PAAVTWISNN  420
RGGNTNSNEK RILCIDYSAC CTLTLSMDEY INGYARHHLE EGQGVAGKAL QSNFHIQHDI  480
YEPDPAHFND FDNASNWQNR SLRASFAIRL TSTHSCKDDY VLEFFLPYGM EDTSERELLI  540
SKVLRTLQEI CFKSWKVWVT EQNEASGFGV RLDDERMSNI PHEVVLGVNE FMTFNSTSNQ  600
AGETYEPLEQ DVEEQFAIDA PALNIENAML TVNGGLQSTN KRRKKQSAIV APAPNDENAS  660
LIGDSGLQGT NKRKKKQSAM TAPALNDENA SLIVDGGHQN TNKRQRKSTV WENFDKPCRE  720
NGQLWATCKH CKKKYRAESY RGTTNLHKHL KKCLPRRQDE AEQQPLIFET GGSSTSIIQR  780
NSVINQERSR LDIEKMIINH GYPLDMVQHE FELHSKDDVE ANVLAICRQE KEKLIKYFDN  840
LSCLLSLTLG LWSSNDRMMT YCCLTVHFID DGWQLKKKIL AFKNLRYSYD TGTVHEFIKS  900
VLAEWRINKN VRFILLDITP PKEHMIGELR SKVSDKAQLV HGHLFCVSSY AQILSLLIQD  960
GFSEIRSLLY KIRECIEYVN GSSLGRQWFQ EAINNGSLQG KEMPFQDVPA RWDTTFLMLE  1020
SSLEFREAFN HLEQLDRDFK VNLSTEEWNK ATSICECLKE LHKSTSNFPK TLESYFLSVR  1080
DVYKNLLKWK QSEHVYVRST ANKMKGKFDE YWGEASLALG ISVVLNPSFK LKLVKYGYQQ  1140
IYGSEYSLHI SKFLHNVTVV YHKYDQGPSS SAMVDESLCP SSDISFEEWH SQQNELDQYL  1200
EQPLEKLDKD GNVLAWWQEN AQKFPVLGKM ARDFLAIPVS TVISKSSEVM KMASVHDGVH  1260
HEIA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-17	6	301	5	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	RRKRKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0362s0300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3N7G5D1	0.0	A0A3N7G5D1_POPTR; Uncharacterized protein
STRING	POPTR_0016s02730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15568	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-46	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0362s0300.1.p