PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0362s0430.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 193aa    MW: 21976 Da    PI: 10.3563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0362s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000193961123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C+  F+++  L  H++ H
  SapurV1A.0362s0430.1.p 39 FRCKYCKNKFTTSQALGGHQNAH 61
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-63667No hitNo description
PROSITE profilePS5015711.1773966IPR007087Zinc finger, C2H2
PfamPF139126.5E-63963IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSSMEQNSAA ENMNSKRSKL DLNLMDFFEG NSSGERRMFR CKYCKNKFTT SQALGGHQNA  60
HKRERAMEKR DKLLGEHVMT YVPYPLWDMA MMRSPPVHYS YLGKNLGFDM RSMIHKPYNH  120
WFRGGFGQGG HYGGASTPHI MNHQPRFSGH MRGLQSMHSS IFTNGNPIGG SSISKNQKEE  180
EGRPRLELSL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0362s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041411.12e-84PREDICTED: zinc finger protein 3-like
TrEMBLB9IHJ13e-97B9IHJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02800.15e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1747547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.16e-19C2H2 family protein