PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0366s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 313aa    MW: 35113.7 Da    PI: 4.3089
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0366s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1987140356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  SapurV1A.0366s0100.1.p  87 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 140
                             56689************************************************9 PP
2HD-ZIP_I/II127.65.5e-4186177192
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdye+L ++y+ lk++ ++L ke+e+L
  SapurV1A.0366s0100.1.p  86 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEVLESSYNGLKADYDNLLKEKERL 172
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelk 92 
                             r+e++
  SapurV1A.0366s0100.1.p 173 RAEVN 177
                             *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-2071144IPR009057Homeodomain-like
PROSITE profilePS5007117.4182142IPR001356Homeobox domain
SMARTSM003891.5E-1985146IPR001356Homeobox domain
CDDcd000867.75E-1987143No hitNo description
PfamPF000468.3E-1787140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-2089149IPR009057Homeodomain-like
PRINTSPR000311.3E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5122138IPR000047Helix-turn-helix motif
PfamPF021833.6E-16142183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAACGGGGFN SNLSVLIQSQ RGPCAASQPL EAFFLSGTSP TFLGSRSVMS FADVHQANGS  60
TRPFLRSYDH EDNGDDDLDE YLHQPEKKRR LTVDQVQFLE KSFEVENKLE PERKIQLAKD  120
LGLQPRQVAI WFQNRRARWK TKQLEKDYEV LESSYNGLKA DYDNLLKEKE RLRAEVNLLT  180
NELLLKEKEK GGSELSDKDA FYEEPPGKAM ADSASEGEVS TVACKQEDIS SDKSDMFDSE  240
SPHYADGVHS SLLEAGDSSY VFQPDQSDLS QDEEDNLSKS LLPPLAFPKL EDDDYSDPPA  300
CFEDHAIWCW SF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0366s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478220.0EF147822.1 Populus trichocarpa clone WS0125_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317992.20.0homeobox-leucine zipper protein HAT5
TrEMBLB9I3080.0B9I308_POPTR; HD-ZIP family protein
STRINGPOPTR_0012s07270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-45homeobox 1