PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0371s0100.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 205aa MW: 23391.1 Da PI: 8.7729

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0371s0100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.2	5.2e-09	53	82	7	36
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaeva 36 ++++ ++ R+n++ KKA EL +LCd +v SapurV1A.0371s0100.1.p 53 IKNTKSYEDRKNTLKKKARELAILCDERVV 82 677889********************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.22E-6	53	84	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.096	58	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-5	59	82	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MQGLKQFSSL YTIHKNIVFY ASLFIVINAA DLFLCFLCQK SRANHTMTPL ENIKNTKSYE 60 DRKNTLKKKA RELAILCDER VVEVLKAYKA SPTVNNVECE AKVVHEAPRV FETWDPRFDY 120 LPEESLMDVL KILERQSQVV YQVVCKEQTG KKRKIMHDKI KSKTVGDVNK MEAGNHSDIS 180 IFLGKISGSS SSYFHTSVDL EFCL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0371s0100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002311944.3	1e-102	uncharacterized protein LOC7486908
TrEMBL	A0A2K1ZAA0	1e-101	A0A2K1ZAA0_POPTR; Uncharacterized protein
STRING	POPTR_0008s02120.1	1e-70	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17113	4	8

Link Out ? help Back to Top
Phytozome	SapurV1A.0371s0100.1.p