PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0372s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 273aa    MW: 30563.3 Da    PI: 8.063
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0372s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.62.9e-29102161159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+aed +v++  Y geHnhe
  SapurV1A.0372s0170.1.p 102 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApNCPVKKKVQRCAEDDSVLVASYDGEHNHE 161
                             58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-2993161IPR003657WRKY domain
PROSITE profilePS5081124.79997163IPR003657WRKY domain
SuperFamilySSF1182903.27E-2599162IPR003657WRKY domain
SMARTSM007741.7E-33102162IPR003657WRKY domain
PfamPF031066.1E-24103161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDVFPSYREK VEELQSELEH RQKENEKLRM VLGIMTRNFS ILQDKIQETG EHQQKAASNL  60
TEGDRSCHEI LASNKRPRSE VPITKASRIL VRSRSNDKSL IVKDGYQWRK YGQKVTKDNP  120
SPRAYFRCSM APNCPVKKKV QRCAEDDSVL VASYDGEHNH EPNGSHGQYL CSANSSSSSK  180
SSISIHGPIF PIETPPPQPS IALDLTLSSP DNQHSEKPCQ RSMEVCEKID KNYSTRYIEE  240
YVASLTTDPS FSVALAAAVA RSMSDLSTSR LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-2087161172WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0372s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036676.11e-146PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A060APS81e-141A0A060APS8_POPTO; WRKY60 protein
STRINGPOPTR_0018s02480.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-41WRKY DNA-binding protein 40