PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0374s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 933aa    MW: 104579 Da    PI: 7.0898
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0374s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.18.4e-29616665352
                  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             ++isle+l++yF++++kdAA++Lgvc+T+LKriCRq+GIkRWP+Rkik++
  SapurV1A.0374s0230.1.p 616 QTISLEVLRQYFAGSLKDAAQSLGVCPTTLKRICRQHGIKRWPSRKIKKV 665
                             79**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.859601685IPR003035RWP-RK domain
PfamPF020427.3E-26617665IPR003035RWP-RK domain
SuperFamilySSF542771.54E-18835924No hitNo description
SMARTSM006665.8E-17839922IPR000270PB1 domain
PROSITE profilePS5174517.752839922IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.3E-18840919No hitNo description
PfamPF005641.0E-12842921IPR000270PB1 domain
CDDcd064075.16E-34842921No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 933 aa     Download sequence    Send to blast
MDDHRSSTPD STFRIFSGNV TNWDFMDEIL YQGWFEKDGG FNFLKQGPST SNVLHDPSLY  60
MPFMGTTTLS TASNQEDYKE ETERNFHGNP PLDYPNITEL VQTELQVEDS VDTSKSFSQS  120
TSCRVEAAGS GAEWQMAPRG NPGTSSSVKE RVMQAVGYLK NCIQDRDILI QIWLPMEKEG  180
KRVLATIDQP YFVNPSCKSL ASYRKVSTAY HFQAEGDPQS SVGFPGRVFL EKLPEWTPDV  240
RLFRREEYPH TDHAVQHNIR GSLALPLFKQ GSDTCLGIVE IATTIQKISY RPELQDICKA  300
LQAVHLRSSE DFCSPGVETC NRSIQVAVPE MSDIVKSVCK TYRLPLALTW ALCSRQGKSR  360
RQQLPERFSS CISTVDSACF LADRDFSGFH AASFEHYLFL GQGIVGRAFT TQKQCFSNDI  420
TSYSKKDYPL AHHAKIFGVH AAIAIPLRSI STGFVEFVLE LFLPRDCQET EEQKKMWDLL  480
PVTIKHVCRS LQVVMDKEVD EGEKQSFESS PSKEAPPDES SWIARMVEAQ KKGKSCFVTW  540
DYPKEPIEEF KTITHWDGSA VEIDQKQVIS EWSEFQQNSR PNSRVEGDGV SSDFFGRHSL  600
GSRKTGKKRR TKTEIQTISL EVLRQYFAGS LKDAAQSLGV CPTTLKRICR QHGIKRWPSR  660
KIKKVDHSLR KLQLVIDTVQ GAKGGFQIES FYSAFPELSS PKLSSHTSYS SFRRIDNSKH  720
LDSPPDDSSP CGTASKSQSS PCSRSSCSSN CCSARGQQHA ATTITGPGNG NGSLVAEASN  780
GILKRSTCSG ELEELHSLNN QGEPDFLVRS QIHKVNDHIH RSELESRPGF GQSLREGGVF  840
GVKAIFGVEK VRLGLQPKWG LGELKQEIGK RFEIDDFTGI GLKYMDDDGE WVRLTCDGDL  900
EECKEIHRFS HRNTIKISLH EHSSSFCFRG SF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1606611KKRRTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0374s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464228.10.0protein NLP2 isoform X2
TrEMBLB9HPY40.0B9HPY4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein