PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0374s0240.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Nin-like

Protein Properties

Length: 340aa MW: 38006.5 Da PI: 8.2251

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0374s0240.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53	6.6e-17	46	72	26	52
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRkiksl 52 +vc T+LKriCRq+GIkRWP+Rkik++ SapurV1A.0374s0240.1.p 46 QVCSTTLKRICRQHGIKRWPSRKIKKV 72 49***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.615	1	92	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-13	46	72	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.88E-17	244	333	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.1E-17	248	328	No hit	No description
PROSITE profile	PS51745	19.253	249	332	IPR000270	PB1 domain
SMART	SM00666	1.3E-11	249	332	IPR000270	PB1 domain
CDD	cd06407	1.71E-31	250	330	No hit	No description
Pfam	PF00564	5.2E-11	251	328	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDDHNSSTPD STFGIFSRNV TNWDFMDEIL YQGWFEKDGG FNFLKQVCST TLKRICRQHG 60 IKRWPSRKIK KVDNSLRQLQ QVIDTVEGAK GDVQIEYFYS AFPELSSPKI SSRAPYSSFR 120 RSDNSKHLHS PPHDSSPCCT ASKSHSSPCS RSSCSSNCCS ARAQQHAATT ITVSSNIGNG 180 ALLAETSNKI LKRNCSGELA EHHSLNNQGD AEFLVRSQIH KTRTVKGHIR QSELESPPGF 240 GQSLREGGAL EVKAIFGVEK VRLGLQPYWG LRALQQAIGK RLEIDDFTGF GLSYMDGDGE 300 WVRLTCDDDL EECKEIHRFS QNNTIKISFH KYSSAFGFH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0374s0240.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464572.1	1e-146	protein NLP2
TrEMBL	A0A3N7H6Q5	1e-149	A0A3N7H6Q5_POPTR; Uncharacterized protein
STRING	POPTR_0009s16820.1	1e-145	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	6e-58	Nin-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0374s0240.1.p