PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0378s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 197aa    MW: 22666.6 Da    PI: 8.9249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0378s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-053860123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ Fs+   L  H+++H
  SapurV1A.0378s0150.1.p 38 YPCSFCKRQFSSAQALGGHMNVH 60
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-63564No hitNo description
Gene3DG3DSA:3.30.160.601.3E-43563IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00553860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2813865IPR007087Zinc finger, C2H2
PfamPF139127.3E-73861IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVKKYPQARS AVKDEWERKN AIFQGEHSIH FSWPQRNYPC SFCKRQFSSA QALGGHMNVH  60
RRDRAKLRQL PPWFFKYPEC PTSNPNPNDH LLSSSSKFSP YPDHTHDHSP YLNSFSSPCC  120
REKKSIVECH QSKDLKKKKS NAGAVFGVGE LKRNFSQECD QREALRRSEI INSDMETGCE  180
DPKEVLDLEL RLGLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0378s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026016.11e-107PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A2K2AKL51e-101A0A2K2AKL5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24280.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-27zinc finger protein 11