PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0379s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family DBB
Protein Properties Length: 204aa    MW: 22760.6 Da    PI: 6.6019
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0379s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.9e-08333434
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                            ++C+ +e+  ++lfC  ++  lC++C ++ H
  SapurV1A.0379s0190.1.p  3 TICDVCESSAAILFCAADEAALCRSCDEKVH 33
                            68******99******************998 PP
2zf-B_box253.9e-085391337
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                             + C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  SapurV1A.0379s0190.1.p 53 VPQCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                            689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.281147IPR000315B-box-type zinc finger
CDDcd000211.83E-6345No hitNo description
PfamPF006432.3E-6341IPR000315B-box-type zinc finger
SMARTSM003361.4E-105196IPR000315B-box-type zinc finger
PfamPF006437.0E-65485IPR000315B-box-type zinc finger
CDDcd000211.87E-65484No hitNo description
PROSITE profilePS501198.6175696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRTICDVCES SAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SAVPQCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR MEEQGQQPLD  120
HNETRRDQNQ PLKLTARENQ QNHRASPVPM VENNTDSYCK MDNKLIDLNA RPQRIHGQNS  180
NNQENYESSS AVPVGSFNRE PAK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0379s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1457660.0EF145766.1 Populus trichocarpa clone WS0113_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313009.11e-143B-box zinc finger protein 19 isoform X1
RefseqXP_024463705.11e-143B-box zinc finger protein 19 isoform X1
RefseqXP_024463706.11e-143B-box zinc finger protein 19 isoform X2
SwissprotC0SVM55e-82BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3N7FND91e-141A0A3N7FND9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12730.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-79DBB family protein