PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0381s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 118aa    MW: 13830.9 Da    PI: 11.3063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0381s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.4e-13697190
                            EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83
                            f k l  s +  s+rl++p     ++    g++   + + ++d+  + W +kl++r++ +     v+t+ W +Fvk++gL++gD vvF+
  SapurV1A.0381s0030.1.p  6 FTKLL--SPTDISHRLTIPMANRGDFklpTGQH--AINIEVTDTLEQPWIFKLSIRRNNNPnprPVFTGEWIRFVKEKGLRAGDRVVFS 90
                            56666..55556678999999877775554443..45788999999*******994444444579************************ PP

                            E-SSSEE CS
                      B3 84 ldgrsef 90
                            +++ ++ 
  SapurV1A.0381s0030.1.p 91 RQQVEGN 97
                            7765544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-16397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-144100IPR015300DNA-binding pseudobarrel domain
CDDcd100174.41E-114107No hitNo description
PfamPF023622.1E-9697IPR003340B3 DNA binding domain
SMARTSM010190.00286109IPR003340B3 DNA binding domain
PROSITE profilePS508638.9526107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEQHRFTKLL SPTDISHRLT IPMANRGDFK LPTGQHAINI EVTDTLEQPW IFKLSIRRNN  60
NPNPRPVFTG EWIRFVKEKG LRAGDRVVFS RQQVEGNGVQ YRIRAERKIF KYWVNVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0381s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.12e-61PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2K2AYH59e-61A0A2K2AYH5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23010.12e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-09B3 family protein