PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0388s0180.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 144aa    MW: 15784.1 Da    PI: 9.1958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0388s0180.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-0533721054
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  SapurV1A.0388s0180.3.p 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLMEAMEYIQFL 72
                            66788889999999**99999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-102291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.422372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-122985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00162978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-53377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMENKRSPCS VDHASLTSLA TKRHKADFSI STKERKEKLG ERIVALQQLV SPYGKTDTAS  60
VLMEAMEYIQ FLHEQVQVLS APYLQGASTA QMQELGQYSL RNKGLCLVPT SCTAGIARSN  120
GADLWAPIKS PSPKFNKDIS PFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0388s0180.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376438.11e-103transcription factor bHLH153
SwissprotQ7XJU28e-63BH153_ARATH; Transcription factor bHLH153
TrEMBLU5FT801e-101U5FT80_POPTR; BHLH family protein
STRINGPOPTR_0013s13050.11e-102(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.54e-65bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]