PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0391s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 235aa    MW: 26441.4 Da    PI: 7.6522
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0391s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.45.5e-31360258
             ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                            ++v+Y+eC++NhAas+Ggha DGCgEfmp+ g++ gt + l+CaACgCHRnFHRr+ +
  SapurV1A.0391s0280.1.p  3 QSVKYRECMRNHAASIGGHANDGCGEFMPHGGDDeGTRDWLTCAACGCHRNFHRRQGS 60
                            5799**************************99888********************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.1E-28558IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-16658IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-27658IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.87758IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.31E-16137205IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27138205IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-24145202IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDQSVKYREC MRNHAASIGG HANDGCGEFM PHGGDDEGTR DWLTCAACGC HRNFHRRQGS  60
DKRQHRQQLL LSPPPITQQF LLYGVPTSKN TNPVHDFIPR PHEDDDDLDD LDHDRRSETP  120
ERGEMDVMGS GGEGFMVKSA GSSSKRFRTN FTQEQKERML EFAEKIGWRR MRKHDDMALN  180
QFCNEIGVKR KVLQVWMHNN KNANRHRDGA PRVPADGAPP SPPPSAPPHQ PVGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241432031675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0391s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003997.11e-112PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLA0A3N7HD751e-107A0A3N7HD75_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11330.12e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-50homeobox protein 22