PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0392s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 668aa    MW: 73719.4 Da    PI: 6.0501
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0392s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-202681156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            ++  ++++++q+++Le++F+++++p++++r +L+k+lgL+ rq+k+WFqNrR++ k
  SapurV1A.0392s0030.1.p 26 KKAYHRHSSQQIQQLENFFKECPHPDEKQRLQLSKELGLEARQIKFWFQNRRTQAK 81
                            6788999**********************************************988 PP
2START134.51.2e-421824023206
                             HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                   START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                             a  a++el+++ + +ep+W ks+       ++ ++d+ + + +   +     ++e +++s+ v+m+ ++lv  +ld + +W   ++ 
  SapurV1A.0392s0030.1.p 182 AAGAMEELITLLGGNEPFWIKSPsdgrfilDQTTYDKIYPRAAH--FtscnARVESSKDSATVTMPGMDLVDMFLDPN-KWVDLFPt 265
                             6679*********************9977777777777766633..356888**************************.99999988 PP

                             ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                   START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                +a t++v++ g      g lq m+ ++  lsp+vp R+f+f+R ++ql+ g+wvi+dvS d  ++   s+s  +a +lpSg+li
  SapurV1A.0392s0030.1.p 266 ivtEARTIQVLQAGtegnrhGSLQMMYEQMHILSPMVPtREFYFLRLCQQLEPGQWVIADVSYDYLKESG-SPS--CAWRLPSGCLI 349
                             889*************************************************************999966.555..566******** PP

                             EEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 155 epksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                             +++++g skv+wvehv++++r+  h l+r l+  g a ga +w a l+r ce+
  SapurV1A.0392s0030.1.p 350 QDMADGFSKVIWVEHVEVDDRIQtHRLYRDLICGGSAYGAERWIASLHRICER 402
                             **********************99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-221183IPR009057Homeodomain-like
SuperFamilySSF466891.09E-191986IPR009057Homeodomain-like
PROSITE profilePS5007117.542383IPR001356Homeobox domain
SMARTSM003891.7E-182587IPR001356Homeobox domain
PfamPF000461.2E-172681IPR001356Homeobox domain
CDDcd000864.07E-182683No hitNo description
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
SuperFamilySSF559613.3E-27171403No hitNo description
PROSITE profilePS5084838.399171405IPR002913START domain
CDDcd088759.82E-101175401No hitNo description
SMARTSM002343.6E-34180402IPR002913START domain
PfamPF018529.9E-36183402IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-4246366IPR023393START-like domain
SuperFamilySSF559611.32E-15430652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MELQMGNNGG DSGDEHGASN SGNKGKKAYH RHSSQQIQQL ENFFKECPHP DEKQRLQLSK  60
ELGLEARQIK FWFQNRRTQA KAQIERSGNS VLRAENERIH CENLAIREAM KNVICPACGG  120
PPFGEEERQL HLQKLRQENA RLREEASSCA LPAFVQNQRM GNPRSDLERN PDMEKVLMAE  180
TAAGAMEELI TLLGGNEPFW IKSPSDGRFI LDQTTYDKIY PRAAHFTSCN ARVESSKDSA  240
TVTMPGMDLV DMFLDPNKWV DLFPTIVTEA RTIQVLQAGT EGNRHGSLQM MYEQMHILSP  300
MVPTREFYFL RLCQQLEPGQ WVIADVSYDY LKESGSPSCA WRLPSGCLIQ DMADGFSKVI  360
WVEHVEVDDR IQTHRLYRDL ICGGSAYGAE RWIASLHRIC ERLAFSTTVP PPELGGVVTS  420
AEGRKSIANL AHRMMKIFCA SLAMSGKQDF RQMSEGNNSG VRVAIRKNEE QGQPIGTVVS  480
AATSFWLPLS PQNVFDFFKD EKSRTQWDIL SNGNPVHEIS RISNGSDPGN CISIIQPFIP  540
SENNMLILQE SCTDSSVSMI VYAPVGVPAM DVAISGEGSS IIPILPSGFV ISGDGRVDIR  600
GNSYSSTSST GSNSGGSLLT ISFQILVSGP NSSPSTEFNM KSVATVNTLI STTVMKIKSA  660
LNCSNLD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0392s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2755516e-43GU275551.1 Populus balsamifera isolate WHR03 haplotype B unknown gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038413.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2K2AR950.0A0A2K2AR95_POPTR; Uncharacterized protein
STRINGPOPTR_0017s01400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11