PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0392s0080.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 133aa MW: 14677.6 Da PI: 9.726

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0392s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.8e-08	59	94	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+rWT+eE++++++a k++ ++g ++t+ q++s+ qk SapurV1A.0392s0080.1.p 59 RDRWTKEEHKKFLEALKLYE---------HVG-TKTAVQIQSHAQK 94 89*****************7.........789.9999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.43E-11	53	94	IPR009057	Homeodomain-like
SMART	SM00717	0.0013	58	98	IPR001005	SANT/Myb domain
CDD	cd00167	2.98E-7	61	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MGLDQCGGTR PNLVLPAGNG ILLSATLQNA TSHQLKEQFS YGNDYSPKVR KPYTITKQRD 60 RWTKEEHKKF LEALKLYEHV GTKTAVQIQS HAQKSKTTNL DNEIAKFSVS LGSISIHESL 120 SPQEPQTPSL SI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0392s0080.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444596.1	8e-47	protein REVEILLE 1
TrEMBL	A0A2K1X7Z1	2e-45	A0A2K1X7Z1_POPTR; Uncharacterized protein
STRING	POPTR_0017s01380.1	3e-46	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-27	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0392s0080.1.p