PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0393s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 295aa    MW: 33505.4 Da    PI: 9.9112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0393s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-1714102192
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             ffkv    + l+s++l+lp  f  ++ g++++ +k  tl+d + + W+v l   k+ g  v+ +GWkeF+  + L +gDf++Fk+dg
  SapurV1A.0393s0150.1.p  14 FFKVY--LSDLSSRQLSLPPAFGIQFnGKDEALPKNATLKDGNTKIWQVGL--VKREGVWVINDGWKEFACYHSLVDGDFLIFKYDG 96 
                             77877..78889999*******777779999********************..999999**************************99 PP

                             SSEE.. CS
                      B3  87 rsefel 92 
                              sefe 
  SapurV1A.0393s0150.1.p  97 ISEFEV 102
                             899865 PP
2B340.25.9e-132082771789
                             E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                             ++p+kf++eh+++   +k+++l++esg+ W v+ + + ++  +vl++G +eF++an++  +D + ++++ +++
  SapurV1A.0393s0150.1.p 208 RIPNKFMREHNIE--VPKEIKLRNESGKLWPVQNNLWDSG-YTVLKNGFSEFCRANKMIPKDQCDLTFICSKG 277
                             7*********877..5679***************888775.689********************999887443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.26612108IPR003340B3 DNA binding domain
CDDcd100171.21E-1612106No hitNo description
Gene3DG3DSA:2.40.330.102.8E-1712108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1713109IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.8E-1314108IPR003340B3 DNA binding domain
PfamPF023621.2E-1514102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-14189273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14191277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.854192289IPR003340B3 DNA binding domain
SMARTSM010193.8E-6196291IPR003340B3 DNA binding domain
CDDcd100173.70E-8208280No hitNo description
PfamPF023623.5E-10208274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVKPKRNVSF SKEFFKVYLS DLSSRQLSLP PAFGIQFNGK DEALPKNATL KDGNTKIWQV  60
GLVKREGVWV INDGWKEFAC YHSLVDGDFL IFKYDGISEF EVELYCNNGL KKEGRGLENK  120
PSIHVKEEQE TEEDFIGRRP SSGCKQNDSV IEPRITRSQG LFGKSGPKSS ETKIAKLGEC  180
KGSKAPSSVP REVPRFVINI TRYTRYARIP NKFMREHNIE VPKEIKLRNE SGKLWPVQNN  240
LWDSGYTVLK NGFSEFCRAN KMIPKDQCDL TFICSKGNLC KVIQVQAVRR GPRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0393s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461032.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A2K1ZNR60.0A0A2K1ZNR6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11890.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-29B3 family protein