PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0400s0250.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20747.9 Da    PI: 9.6991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0400s0250.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-28955147
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                            krien + rqvtfskR+ng+lKKA+ELS+LCdaevaviifs++g+l+
  SapurV1A.0400s0250.4.p  9 KRIENATSRQVTFSKRKNGLLKKAYELSILCDAEVAVIIFSQKGTLF 55
                            79******************************************996 PP
2K-box72.31.4e-2481170998
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               e+  e+l++e+a++ k+ie L++ qR+llG+dL+s+s keL+ + +qLe sl++iR++K++l+ eqie+lq+ke  l  en +L+
  SapurV1A.0400s0250.4.p  81 DVEQYKEQLRHESANMAKKIEILETLQRKLLGQDLDSCSPKELKDIGNQLEISLSNIRARKTQLFEEQIEQLQEKETLLLMENARLS 167
                             45677889******************************************************************************9 PP

                   K-box  96 kkl 98 
                             k++
  SapurV1A.0400s0250.4.p 168 KQV 170
                             986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.553161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-36160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.21E-34371No hitNo description
SuperFamilySSF554556.02E-27373IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-283859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.120.2309.2E-451170No hitNo description
PfamPF014861.4E-2385170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.19286178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVRGKVQLKR IENATSRQVT FSKRKNGLLK KAYELSILCD AEVAVIIFSQ KGTLFASADQ  60
IQKTIDRYRE NAKQVHTDRI DVEQYKEQLR HESANMAKKI EILETLQRKL LGQDLDSCSP  120
KELKDIGNQL EISLSNIRAR KTQLFEEQIE QLQEKETLLL MENARLSKQV IVWFWNIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-171109191MEF2 CHIMERA
6byy_B1e-171109191MEF2 CHIMERA
6byy_C1e-171109191MEF2 CHIMERA
6byy_D1e-171109191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0400s0250.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318261.11e-103MADS-box protein AGL42
RefseqXP_024437836.11e-103MADS-box protein AGL42
SwissprotQ9FIS13e-60AGL42_ARATH; MADS-box protein AGL42
TrEMBLB9I4G51e-102B9I4G5_POPTR; Uncharacterized protein
STRINGXP_004308127.12e-71(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-52AGAMOUS-like 42