PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0409s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 343aa MW: 37105.1 Da PI: 8.1444

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0409s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	35	92	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 l+cprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + SapurV1A.0409s0070.1.p 35 DLNCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 92 689****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	29.357	36	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	36	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-33	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MMPPNNFQAK QASFDDNQIS ISNRKTTTTR PQEVDLNCPR CDSPNTKFCY YNNYSLTQPR 60 HFCKTCRRYW TKGGALRNVP IGGGCRKNKK IKSSTRLSGD SSGSSEIGGF NFFHGLSPVV 120 DFNLGGLSFP RLSPSPNGIY NHFPSFGDIS ATSEAAVSVT SPRFRLDPSG SSTAGSGSGS 180 LTGFSYPLTS VSSGFCGASQ ENIGGASMNV NSNLAYSIES LSCINQDLHW KLQQQRLAML 240 FGAGKNDHKD VSTVLTGPIE NHIQKLQPMM FENLEISKPQ VCAAGNSRKD GETSGDPSTE 300 WFLGNSYAPV IATPTNRSNI GNDDYTGNWD GVQAWGDLNH YI*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MMPPNNFQAK QASFDDNQIS ISNRKTTTTR PQEVDLNCPR CDSPNTKFCY YNNYSLTQPR  60
HFCKTCRRYW TKGGALRNVP IGGGCRKNKK IKSSTRLSGD SSGSSEIGGF NFFHGLSPVV  120
DFNLGGLSFP RLSPSPNGIY NHFPSFGDIS ATSEAAVSVT SPRFRLDPSG SSTAGSGSGS  180
LTGFSYPLTS VSSGFCGASQ ENIGGASMNV NSNLAYSIES LSCINQDLHW KLQQQRLAML  240
FGAGKNDHKD VSTVLTGPIE NHIQKLQPMM FENLEISKPQ VCAAGNSRKD GETSGDPSTE  300
WFLGNSYAPV IATPTNRSNI GNDDYTGNWD GVQAWGDLNH YI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0409s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006491.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	B9H6Q9	0.0	B9H6Q9_POPTR; Uncharacterized protein
STRING	POPTR_0005s19310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	SapurV1A.0409s0070.1.p