PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0417s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 246aa    MW: 27871.2 Da    PI: 4.8781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0417s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd +l  +++++G+ +W+  ++  g+ R++k+c++rw++yl
  SapurV1A.0417s0130.1.p 14 KGAWTAEEDRKLMAYITRYGSWNWRQLPKFAGLQRCGKSCRLRWLNYL 61
                            79********************************************97 PP
2Myb_DNA-binding537.8e-1767111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T+eE+e+++ + + lG++ W++Ia++++ gRt++++k++w++ 
  SapurV1A.0417s0130.1.p  67 RGNYTKEEEEIIISLRETLGNR-WSAIAAKLP-GRTDNEIKNHWHTN 111
                             899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.899961IPR017930Myb domain
SuperFamilySSF466898.41E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-91363IPR001005SANT/Myb domain
PfamPF002493.8E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-231568IPR009057Homeodomain-like
CDDcd001671.06E-81661No hitNo description
PROSITE profilePS5129424.10562116IPR017930Myb domain
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002493.7E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2469116IPR009057Homeodomain-like
CDDcd001671.38E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRTPCCDTT GLKKGAWTAE EDRKLMAYIT RYGSWNWRQL PKFAGLQRCG KSCRLRWLNY  60
LRPNIKRGNY TKEEEEIIIS LRETLGNRWS AIAAKLPGRT DNEIKNHWHT NLKKRLRKSS  120
PQSSSGDDDL AQNSKGQEKD TEATDVNTQT PANSAQIIES SSSTLSPQAP SIDLSTTDNI  180
APANMDLISD DVFAFLEAYE FPGGNFWTEP FLSDDYNFMP SDLMEPLVYP DSPCSFIIME  240
DYNLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0417s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048479.11e-136PREDICTED: myb-related protein Myb4-like
TrEMBLB9INU31e-135B9INU3_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14140.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.14e-62myb domain protein 13